I ought to be embarrassed posting such a baby-steps kind of thing but for the first time this morning I fitted a saddle that a I made myself to one of my guitars. Ta-da!!! It's ugly (although I got the top edge smooth and gloriously shiny) and still needs to be lowered about 0.020"-0.030" to get the action down to where I want it but it fits tight, it works right with no funny noises and it's all mine.
The stock saddle that came out of this guitar had all sorts of fancy compensation angles built into it but with the strings and the action of my setup the intonation was really not "all that" according to my old Peterson. After some watchin', cipherin' and head-scratchin' on it I convinced myself that mostly what it needed was for the string contact point to be as far back as possible rather than some up, some back, some in between which wasn't working out right. Sure enough that seems to be dead-on comparing open strings to fretted 12th strings with the 1st, 4th, 5th and almost on the 6th. The 2nd string and 3rd string have their usual couple cents error fretted at the 12th fret but otherwise pretty good. Of course that may all change when I drop the action down 1/64" or so tonight but that will actually help keep the 6th string from going slightly sharp when fretted up the neck.
I found that the "secret" tools are the little sandpaper drum on a Dremel, starting at high speed to cut the basic shape then on low speed to contour, and the cloth mini-buffing-wheel (dry, clean) to put the final gloss on the top edge. In between of course copious fine-tuning with 220-grit sandpaper. Except for the stench of burning bone it was a fun little job, took me about 45 minutes to get this far with it.